rs47780130 SNP Detail

Summary

• ID
  rs47780130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121137758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCTCTC TCTCTCTGTC TCTCTCTCTC TCTCCCCCCC
  CCCCTGTACA TTAAAAAGTA CTCATTCTAA AAGAACAATA AAACTCCTTT AAAGTCTATG
  Y
  CCAGTGTGGA GAATTCTGTG CCCTGAAGCA TCTATATTTT GGGTTTTGAC TGATAGCTCG
  CTAAGTGTGA GTGGAGAGTC ACATCCTCTG GTTGTGGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MOLF/EiJ	PWD/PhJ
ss60440721	NES15939671	PERLEGEN	MM_PANEL2	f	SNP	T		C	C
ss135718901	ENSMUSSNP1411971	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MOLF/EiJ	PWD/PhJ
rs47780130					SNP	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60440721	NES15939671	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121137758 () rs orientation: forward

Symbol	Name	Function Class
Alg14	asparagine-linked glycosylation 14	within coordinates
Gm33310	predicted gene, 33310	844 bp upstream
Gm66111	predicted gene, 66111	747 bp upstream
Rr367544	regulatory region 367544	911 bp upstream
Tssr35413	transcription start site region 35413	772 bp upstream
Tssr35414	transcription start site region 35414	738 bp upstream