rs47780195 SNP Detail

Summary

• ID
  rs47780195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76041723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACACTC CAGATGCAGA
  GGCAGGCAGA TCTCTATGAG TTTGAAGTCA GCCTAGTCTA CATAGTGAGT TCCAGGACAC
  CAGAGCTATA CAGCGAGGTA GACCCTGTCT TAAAACAAAA CATCTAGCAA TTGGCTCACA
  CTCCAATGAG GCTCTATCTT AAATAAGACG CATCTTAAAT TTGGTGTTCT CTCAGTCACG
  Y
  TGGGTCCCTT TTATCCCAGG AGTTGGGGAC CCTCAGGACA CCCTGCTGTG TCAGACAGGG
  AGACAGAGTG GGGCTGGAGA TAAGAGGTTC TTCTACCTCA GAACCTTCTG GAGTGGATAG
  CCGGATACCT CCCATTCCTA TCGAGGTGTG CTGTTCATTT TTTTGAGACA GGGTTTCTCT
  GTGTAACCCT GGCTGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63566447	NES16968257	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	T	C
ss148164931	ENSMUSSNP6140245	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47780195					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63566447	NES16968257	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76041723 () rs orientation: forward

Symbol	Name	Function Class
Gm62598	predicted gene, 62598	1443 bp upstream
Rr390932	regulatory region 390932	206 bp upstream