rs47781039 SNP Detail

Summary

• ID
  rs47781039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:87749279 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAC AAATAAAGTG CATGACAAGT
  R
  AAGTCTTACT TCTTGAGTAT GCTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61301462	NES16910425	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47781039					SNP	G	G	G	G	G	G	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61301462	NES16910425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:87749279 () rs orientation: forward

Symbol	Name	Function Class
Igf1	insulin-like growth factor 1	within coordinates
Tssr95088	transcription start site region 95088	188 bp upstream
Tssr95089	transcription start site region 95089	209 bp upstream
Tssr95090	transcription start site region 95090	231 bp upstream
Tssr95091	transcription start site region 95091	247 bp upstream
Tssr95092	transcription start site region 95092	274 bp upstream
Tssr95093	transcription start site region 95093	287 bp upstream
Tssr95094	transcription start site region 95094	330 bp upstream
Tssr95095	transcription start site region 95095	349 bp upstream
Tssr95096	transcription start site region 95096	959 bp upstream
Tssr95097	transcription start site region 95097	975 bp upstream
Tssr95098	transcription start site region 95098	1107 bp upstream
Tssr95099	transcription start site region 95099	1870 bp upstream
Tssr98816	transcription start site region 98816	1904 bp downstream