rs47781233 SNP Detail

Summary

• ID
  rs47781233
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTG AAGAATGGGC AGGTGGATCC
  W
  GTGAGTGGAT GATGCACGTG CTCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007467	PARCsnp_1.17812	PARC_SEQ	INBRED	f	SNP			T	A
ss120010375	PARCsnp_1.07455	PARC_SEQ	INBRED	f	SNP			T	A
ss146184035	ENSMUSSNP6184656	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320123259	CHEV_1_174141814	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs47781233					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039250 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	1338 bp downstream
Tssr15168	transcription start site region 15168	1557 bp upstream
Tssr15169	transcription start site region 15169	1479 bp upstream
Tssr15170	transcription start site region 15170	1457 bp upstream
Tssr15171	transcription start site region 15171	1439 bp upstream
Tssr15172	transcription start site region 15172	1358 bp upstream
Tssr15173	transcription start site region 15173	1264 bp upstream
Tssr15174	transcription start site region 15174	1210 bp upstream
Tssr15175	transcription start site region 15175	300 bp downstream
Tssr15176	transcription start site region 15176	1381 bp downstream
Tssr15177	transcription start site region 15177	1435 bp downstream
Tssr15178	transcription start site region 15178	1459 bp downstream
Tssr15179	transcription start site region 15179	1481 bp downstream
Tssr15180	transcription start site region 15180	1686 bp downstream