rs47782010 SNP Detail

Summary

• ID
  rs47782010
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53932903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC TGGGGTAACG GGGAACCAAA
  T
  GCAGGAAAAA CGTACGTCAA ACGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146526364	ENSMUSSNP3091445	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325852544	CHEV_19_54018962	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47782010					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53932903 () rs orientation: forward

Symbol	Name	Function Class
Bbip1	BBSome interacting protein 1	within coordinates
Cpgi11070	CpG island 11070	within coordinates
Rr394562	regulatory region 394562	within coordinates
Rr549684	regulatory region 549684	303 bp distal
Rr549685	regulatory region 549685	560 bp distal
Rr549686	regulatory region 549686	156 bp distal
Rr549687	regulatory region 549687	23 bp distal
Rr549688	regulatory region 549688	within coordinates
Rr549689	regulatory region 549689	419 bp proximal
Shoc2	Shoc2, leucine rich repeat scaffold protein	within coordinates
Tssr5553	transcription start site region 5553	208 bp upstream
Tssr157049	transcription start site region 157049	376 bp downstream
Tssr157050	transcription start site region 157050	368 bp upstream
Tssr157051	transcription start site region 157051	398 bp upstream
Tssr157052	transcription start site region 157052	1444 bp upstream
Tssr159836	transcription start site region 159836	246 bp upstream
Tssr159837	transcription start site region 159837	217 bp upstream
Tssr159838	transcription start site region 159838	within coordinates
Tssr159839	transcription start site region 159839	149 bp downstream