rs47782961 SNP Detail

Summary

• ID
  rs47782961
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135638435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGTGATT CATTCCGGGT GGTTTTTTTT GTTTGTTTGT
  TTTGTTTTGT TTTTTGAGAC AGGGTTTCTC TGTGTAGCTC TGGCTGTCCT GGAACTCACT
  T
  TGTAGACCAG GCTGGCCTCA AACTCAGAAA TTCGCCTGCC TCTGCCTCCC AAGTGCTGGG
  ATTAAAGGCG TGCACCACCA CGCCTGGCCC GGGTGTTTT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145543542	ENSMUSSNP5156564	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47782961					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135638435 () rs orientation: forward

Symbol	Name	Function Class
Gm57161	predicted gene, 57161	within coordinates
Rr419242	regulatory region 419242	445 bp proximal
Tssr8966	transcription start site region 8966	675 bp upstream