rs47783834 SNP Detail

Summary

• ID
  rs47783834
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:33608385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTATTT CTTTTTCCTT
  TTCTTTTTCT TTCTTTTTTC TTTTCTTTTC TTTCTCTTCT TTCTCTTCTT TCTCTTCTTT
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTCTT CAAGACAGGG
  TTTCTCTTAT AGCCCTGGCT GTCCTGGAAC TCACTTTGTA GACCAGGCTA GCCTCAAACT
  S
  AGAAATCCGC CTGCCTCTGC CTCCCAAGTG TTGGGATTAA AGGTGTGTGC CAACCACTGC
  CCAGCGTGTT CTTCTTCCAC CCTTCAACAC CCCTTTTTTT CCTCCCTTTC AACCCCCCAA
  TGCTAAATAA GAGAGAAAGG AAGGATGGAG GGAAGAGAGG AAAGGGAAGA GATCCTGAAT
  CTAATTTCTT CCTCAACAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147961112	ENSMUSSNP6516969	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47783834					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:33608385 () rs orientation: forward

Symbol	Name	Function Class
Gm15657	predicted gene 15657	within coordinates
Gm15658	predicted gene 15658	within coordinates
Rr326609	regulatory region 326609	within coordinates
Tssr140846	transcription start site region 140846	996 bp upstream
Tssr140847	transcription start site region 140847	883 bp upstream
Tssr140848	transcription start site region 140848	839 bp upstream