rs47785240 SNP Detail

Summary

• ID
  rs47785240
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84327180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGCCCCC CAGAGGCACT GGCATTATCT CTGCTCCTGT
  GCCCAAGAAG CTACTGATAA TGGCTGGCAT TGATGACGGC TGCACATCAG CCAGGGGCTA
  Y
  ACTGCCACCA TCGGCAACTT TGTCAAGGTC ACCTTTGATG CCACCTCCAA GACCTGCAGC
  TACCTGACCC CCCCGACCTC TGGAAAGAGA CTGTGTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145357758	ENSMUSSNP1451238	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322745023	CHEV_8_86124450	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47785240					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84327180 () rs orientation: forward

Symbol	Name	Function Class
Gm18001	predicted gene, 18001	within coordinates
Gm42029	predicted gene, 42029	within coordinates
Rr178048	regulatory region 178048	1980 bp distal
Rr178049	regulatory region 178049	1421 bp proximal
Rr181860	regulatory region 181860	1780 bp distal