rs47785603 SNP Detail

Summary

• ID
  rs47785603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52122631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGTGATA CACATATAAT
  TTCAATACTT GGAAGATGAA AGGAGGAAGA AGAGTTCAAG GACAGCCTTG GCTATAGAAC
  ATGTTTGTGG AATAGCCTAA GCTGGGTGTG ACCATGTTTC CACTCCCCTC ATTTACCTCC
  CCTGAAAAAT GGAAGAATGA AATTGTAACA CACAGTTTAG GTCTTATTTG TTAAATGCAT
  Y
  ATTTTCTATT TCTTTCTCCT TGAACATATT TCTTTACTAT TTTCTGGTTT AACAATTTCT
  ACTGGAGGGA GGAGAGATTC TCAATTTTCC AATTCGATGA AGCATTAAGA GTCAGATCCA
  AGTAGGACCT CTGAAATTAT GTGTGGAGCC AGCATTGGCC AACCCTTTGA AATCTGGCCC
  ACTGTACATG GACCAAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215883	NES15722276	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47785603					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215883	NES15722276	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52122631 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Tssr141422	transcription start site region 141422	884 bp upstream
Tssr141423	transcription start site region 141423	848 bp upstream
Tssr141424	transcription start site region 141424	501 bp upstream
Tssr141425	transcription start site region 141425	1838 bp downstream