rs47786783 SNP Detail

Summary

• ID
  rs47786783
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28168386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGTGGGT GTGTATCCGC
  ACGAGCTGCT GCAGTCACCC ATATGTGAAT GCCGAGGTCA AAGGTAATGT TGGGTGTTTT
  CCTCTGTCAC CCCCCTCATT TTTTGAGACA GAGTCTCATT GTAGCGCTGG CCAGTGAACT
  CCAGTGTCCT CCACTATCCA CTTCTGCCTC CATGCTGGGT TTATAGATGA TTTCCTGAGT
  G
  TATTTGGGGG TCTGAACTGC CCCATGTTTG CATGACAAAC ACTATTCGCT GAGACATCTC
  CAGCACATCA AGCACATACA TACATACCTG AGTGTGTGCA ATTCATTTTG ACAGTCTCCT
  GTGTAGCACT AGGTTGCCCT GGAAAACCCC TATATAGGTT AGGCTAGCCT CTATATATGC
  ATACCTGTGT GTGTGTGTGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148633043	ENSMUSSNP6188946	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47786783					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28168386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18706	CpG island 18706	1004 bp distal
Lrfn1	leucine rich repeat and fibronectin type III domain containing 1	719 bp downstream
Rr644283	regulatory region 644283	1956 bp distal
Rr644284	regulatory region 644284	1839 bp distal
Tssr65486	transcription start site region 65486	1059 bp downstream