rs47786861 SNP Detail

Summary

• ID
  rs47786861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:93130512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTACTGA AGGTTCTATG
  TTCAGTATTG TGAGAAATCT GAATTCCTTA GAGCATTGGA CAGCCATGGA AACCCCTTTT
  ACACATTGTA AATGAATGGG AAGTCAAGCC CCTCGTCTGA GTGGTGAGCA TCATTCAATA
  GCAGTGCACT TTTGAGTGAG TATTGTTTGG AAGTGTTGAT TTCCCAGTGT CAGTAATTGG
  Y
  AATTTTTATG GAGTCTCATT AATTTTTTTG TCATAGATAT GCTGAGATCT TCTCATGGTT
  ACTTAAACTA CTCACTACCA TACCATTTTA GACATTGTTT TACCTTTGCA AAGTCTATTT
  TAATACATGC TTACACTGTG TATCACAGAA TAACAAGGAT CAACCCTGTT TCTACTACAT
  GGAAATATAC TGTTTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52467491	NES15435248	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47786861					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52467491	NES15435248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:93130512 () rs orientation: forward

Symbol	Name	Function Class
Gm59657	predicted gene, 59657	within coordinates
Rr387632	regulatory region 387632	480 bp downstream