rs47786930 SNP Detail

Summary

• ID
  rs47786930
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60962366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTATCTA CAACAGGTGG
  CCATTCCCCA GAGTCCACTG TTGCTATCAA CAACTTCAAT CCGACAAAGT AATGGCAATT
  CCAGCAAAAA ATTGGGGAAG GCCAGGAGTC TATCACCATC AAAGGGATGC CCTGATTTCC
  AACAGAGAAG ACTCAGGTCA AAGCTGTGAT CAAAGCACAT AGTTAAACAA TGTGCTATAA
  K
  TGGTGGTGCT AATTCCTAAT TCACATAGAA ATTACATTTT TAGTGATTCA AAGATGACAT
  CAAAGGTCAA TTCTTCATGG CAATGAATGA AAAATAACAG AACATTAAAG ACAAAGCAAA
  GGACCAGGAA ATGAAAAGCT AATGTTCAAA AGCCTCAAAT ATAGTATGAA GACAGTACTC
  ATTAACTCCA TTACAAAATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52343459	NES15282514	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G		G	G	G	T		T
ss323327729	CHEV_10_60589335	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47786930					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343459	NES15282514	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60962366 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1352 bp upstream
Rr219927	regulatory region 219927	1035 bp proximal
Rr228137	regulatory region 228137	1636 bp proximal
Sgpl1	sphingosine phosphate lyase 1	within coordinates