rs47788169 SNP Detail

Summary

• ID
  rs47788169
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115349999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTATCAGAA TTATTTGATT GCATATTAAA TTTTTAATGT
  TATCTAATTT CTATTTCTAT TGAAAATACA TTTCTTCCTG CAATATACTC TGAGTACTGA
  W
  TCCCATTCCT CAACACTGCC TCAATCTTCT CCCAGCTTGA TTCTGTTTCT TTATTTAATT
  AGAAAATAAA AAGAACATAA CTAGCAAGAT TTGGCTGAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61730862	NES17649421	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	A	A	T	T	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47788169					SNP	T	A	T	T	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61730862	NES17649421	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115349999 () rs orientation: forward

Symbol	Name	Function Class
Gm19331	predicted gene, 19331	467 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-62-1	immunoglobulin heavy variable 1-62-1	328 bp downstream