rs47788951 SNP Detail

Summary

• ID
  rs47788951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGCAGA TAGAGTGGGT
  TTAAAACAAA GAGGAGCACA TGAAATTGGG AGGGAAAATC AGTGAGGTGG ATAGGAGCAG
  GTTGTAGTGA GGAGAGTAAG GATGGGTTCA TTAAAAGTGA ATTATATAAA TGCACAAAAT
  TTTCAAACAA AAATAATTTT AAAAAGAGAA GTCAAATGTG TGGTTGTAAG ATATATTTGT
  R
  TTTAAAATAA GGTTATCAAT TTCAAAATCA GATTGTGAGA AAGTCTAATA GAAGTGCTCG
  TAATGAGTGC TAATATGTCA AATTAATTTA TTTAGTTTAA TTTTCCTACT CAAGGATACA
  TGTTTATTAC AATGTGTGAC TGCTGCTGAA GGTTCCTTTA GGGCTTTGTC TGGAAGAAAC
  ATGGTCTATA TTGACAGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936912	NES16189344	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47788951					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936912	NES16189344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259555 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	134 bp upstream
Tssr58809	transcription start site region 58809	796 bp upstream
Tssr58810	transcription start site region 58810	822 bp upstream
Tssr58811	transcription start site region 58811	858 bp upstream
Tssr63019	transcription start site region 63019	1024 bp upstream
Tssr63020	transcription start site region 63020	92 bp upstream
Tssr63021	transcription start site region 63021	14 bp upstream
Tssr63022	transcription start site region 63022	18 bp downstream
Tssr63023	transcription start site region 63023	46 bp downstream
Tssr63024	transcription start site region 63024	149 bp downstream
Tssr63025	transcription start site region 63025	202 bp downstream
Tssr63026	transcription start site region 63026	213 bp downstream
Tssr63027	transcription start site region 63027	262 bp downstream
Tssr63028	transcription start site region 63028	275 bp downstream
Tssr63029	transcription start site region 63029	306 bp downstream
Tssr63030	transcription start site region 63030	336 bp downstream
Tssr63031	transcription start site region 63031	393 bp downstream
Tssr63032	transcription start site region 63032	417 bp downstream
Tssr63033	transcription start site region 63033	442 bp downstream
Tssr63034	transcription start site region 63034	461 bp downstream
Tssr63035	transcription start site region 63035	482 bp downstream
Tssr63036	transcription start site region 63036	536 bp downstream
Tssr63037	transcription start site region 63037	566 bp downstream
Tssr63038	transcription start site region 63038	603 bp downstream
Tssr63039	transcription start site region 63039	662 bp downstream
Tssr63040	transcription start site region 63040	720 bp downstream
Tssr63041	transcription start site region 63041	769 bp downstream
Tssr63042	transcription start site region 63042	794 bp downstream
Tssr63043	transcription start site region 63043	804 bp downstream
Tssr63044	transcription start site region 63044	826 bp downstream
Tssr63045	transcription start site region 63045	917 bp downstream
Tssr63046	transcription start site region 63046	936 bp downstream
Tssr63047	transcription start site region 63047	959 bp downstream
Tssr63048	transcription start site region 63048	987 bp downstream
Tssr63049	transcription start site region 63049	1002 bp downstream
Tssr63050	transcription start site region 63050	1026 bp downstream
Tssr63051	transcription start site region 63051	1078 bp downstream