rs47789188 SNP Detail

Summary

• ID
  rs47789188
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143972297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTATCTT TGAACCTAAA
  TCAGTAGCAG AAACTGTTGG AACTCATTAG CATCCCTTAT CTCAACAGTG AGATCGCACC
  TAGCTTCCCC TTTGCTCCAA GTCCCACAAT GTATGTCTGC ATGGAGAGCA GACTGTGCAC
  AGGCTGTGTG GATGAGTTAA CACAGCTTCC AATGGTTTCT TCATTGCTGT AACTGGCCAT
  T
  GTGTAAATAA GTAGTTACTG ACTTGAGAAC TCACTCCTTA CTCAATAACC CTTGATGGGA
  AGCCATGATC CCTTCACACA CTATTATAGA AGTCCATAAT TACGGGCTTT TCAAACGGTT
  ACTTCTTTAG GCATTTGCCT GTAATAGCTC CTTCAAAGCT GTTAAGCTCT TATCATCTGA
  AGACCCAAGT AGAAAATATT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss136029586	ENSMUSSNP4269951	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs47789188					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143972297 () rs orientation: forward

Symbol	Name	Function Class
Rr74711	regulatory region 74711	1538 bp distal
Rr74712	regulatory region 74712	178 bp proximal