rs47789260 SNP Detail

Summary

• ID
  rs47789260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42454498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGGATGT ACCTGACAAA ACCACATTGT TGTTGTTATC
  ATTATTATTT AGTTTTCCTT CCTTGCTAAC TCCTGACGGA ATCTTTCTCA CCTCAAATGC
  R
  AAGTACTTTA GTTTAGAAAA GACTTGGTGG AAGGGGTGGT GGTGGAAAAG TAGGGTGATC
  TTCCAAACTA ATCTGGTTCC CCGCCCGCCC CAGTAGCTGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52629867	NES15518715	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47789260					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52629867	NES15518715	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42454498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5505	CpG island 5505	528 bp proximal
D13Mit138	DNA segment, Chr 13, Massachusetts Institute of Technology 138	74 bp distal
Edn1	endothelin 1	454 bp upstream
Gm47118	predicted gene, 47118	1276 bp downstream
Gm60910	predicted gene, 60910	within coordinates
Rr388326	regulatory region 388326	within coordinates
Rr478143	regulatory region 478143	1933 bp distal
Rr478144	regulatory region 478144	within coordinates
Rr478145	regulatory region 478145	253 bp distal
Rr478146	regulatory region 478146	321 bp proximal
Rr478147	regulatory region 478147	1611 bp proximal
Tssr119437	transcription start site region 119437	243 bp upstream
Tssr119438	transcription start site region 119438	402 bp upstream
Tssr119439	transcription start site region 119439	424 bp upstream
Tssr119440	transcription start site region 119440	487 bp upstream
Tssr119441	transcription start site region 119441	590 bp upstream
Tssr119442	transcription start site region 119442	760 bp upstream
Tssr119443	transcription start site region 119443	801 bp upstream
Tssr119444	transcription start site region 119444	931 bp upstream