rs47789838 SNP Detail

Summary

• ID
  rs47789838
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152612214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTTGTTT TTTGTTTTTA
  AGTAGTCACA TATGACATGC CCCTTATGGC AGCCCTTGTT TGTCAGCAGG TAGAATATAC
  ATGTATAGGC TATCCACTGC AGATTCTTTT TTTCTTTTTT TTCAAAACAT TTTTAAAAAT
  GTTTTTAAAT TTATTTTATG TATGAGTACT CTATCTGTAT GTCACTTGCA TGCCAGAAGA
  K
  CCCATTACAG ATGGTTGTGA GCTCCATGTG GTTGCTGGGA GTTGAACTCA GGACTTTTGG
  AAGAGCAGCC AGTGCTCTTA ACCATGGAGT CATCTCTCTA GCCTGCTTGT TTTTTTTTTG
  TTTGTTTGTT TGTGTTTTTC GAGACAGGGT TTTTCTGAGT AGACCTGGCT GTCCTAGAAC
  TCTCTCTGTA CTCCAGGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147974210	ENSMUSSNP7011862	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47789838					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152612214 () rs orientation: forward

Symbol	Name	Function Class
Rr374091	regulatory region 374091	1444 bp upstream
Rr567463	regulatory region 567463	79 bp distal