rs47790158 SNP Detail

Summary

• ID
  rs47790158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164327719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GAGGTGTATT TTAATGTGGG TCTCAAAGGG GAGGGAGATG
  ACAAGGATGG TTTCCTGGTA GCTTGGCCCC GACACAGATT TCTAATGGAA ACACACACAC
  R
  CACACACACA CACACACACA CACACCAGTC ATGGCTCATC CTCACGCTGT ATTCAGAGCC
  CAGACAAGGG CATGGGGAGG GAGGCGACAG AGCCTTCATC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148225428	ENSMUSSNP4898790	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47790158					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164327719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12662	CpG island 12662	within coordinates
Dbndd2	dysbindin domain containing 2	307 bp upstream
Gm10725	predicted gene 10725	within coordinates
Gm20458	predicted gene 20458	within coordinates
Tssr21598	transcription start site region 21598	268 bp upstream
Tssr21599	transcription start site region 21599	720 bp upstream
Tssr21600	transcription start site region 21600	1057 bp upstream