rs47790673 SNP Detail

Summary

• ID
  rs47790673
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76724107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTCC ATCACATCAC TTGTCATTTG
  Y
  TGGCTTAAAT AAGTAGCTGG GTGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137907696	ENSMUSSNP4427065	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47790673					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76724107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4784	CpG island 4784	660 bp distal
Gm60317	predicted gene, 60317	703 bp downstream
Rr468228	regulatory region 468228	1480 bp distal
Rr468229	regulatory region 468229	635 bp distal
Rr468230	regulatory region 468230	within coordinates
Sptb	spectrin beta, erythrocytic	within coordinates
Tssr113983	transcription start site region 113983	1032 bp downstream