rs47790716 SNP Detail

Summary

• ID
  rs47790716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24728003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCCTTGG CTGGGCTTGG
  AACACCACTG TTGTCTCCTG GGCCTTCCTT CAAGCTGTCT TCTTCCCCTG TACCACGCTG
  GAACCCACCT AAGTTTAAAC ACTTCCTCAA GCATGTCACT GCCCCACATG GCCACCATCC
  TGGGGGGTCC CCAGAACAGT GTGTCTGATC CCCAGATCCT TGCTCTATGC AGAGTGGCCT
  Y
  CATACCCACC ACTTTACATG TGAAGAAATG GAAACATGGA GAGGGTGGAC ACATGGATGT
  AGATGATTCT GGGATTTGGA ACCACTTGCC CTCGATGTGA GTTTTCCCAT CTGCTGTTCC
  CACCGTCCAA AGTTGGGGGT TCTGAAGTCA GTCCGGGCCT GACTCCTCTG TCGGCAGGGA
  GCTCAGCAAT GAGTGCACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60981550	NES16150022	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47790716					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60981550	NES16150022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24728003 () rs orientation: forward

Symbol	Name	Function Class
Grik5	glutamate receptor, ionotropic, kainate 5 (gamma 2)	within coordinates
Rr643627	regulatory region 643627	1550 bp proximal
Rr643628	regulatory region 643628	1668 bp proximal
Tssr71157	transcription start site region 71157	1433 bp downstream