rs47791838 SNP Detail

Summary

• ID
  rs47791838
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55520142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCTCAT AAGGAAAACC
  ATCTTCTCCA TTAACATCTA ACACTGTAGA AGATGGTCTT TAAAACACAT ACAAGCTACA
  GGGGCAGTGG TCTGGGGGGA TACTTGCACA TAGGAAAACG TACAGAGGTG GTGGAGGGCT
  ATGCCCCAAG GGAGTCTGTG AGTTTAACTT TGGGTTAGTC ATAGTTCTCT TTCTGGACAC
  W
  CAGAGTTGGT CCTCTGACAC ACTCTGGCAA AGAGACCTGA GTAGATCCAT GTGCCTGTAC
  GCTCCTGGTG TCCAACTCAG GGTCAGGGAT GGCAGTGCGG GGGGTACATT GTAGAAGGGC
  ATGTGGTGGA GAAAGCTCTA CAGAGCTGGC TCAGGCTGAA GTGATCCGGT ACCTAGGGTT
  GTATAGTTAT AGACATCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806357	NES17743859	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47791838					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806357	NES17743859	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55520142 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	within coordinates
Rr369714	regulatory region 369714	1957 bp upstream
Rr480446	regulatory region 480446	1863 bp distal
Rr480447	regulatory region 480447	722 bp distal
Rr480448	regulatory region 480448	1968 bp proximal