rs47791915 SNP Detail

Summary

• ID
  rs47791915
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTGTCA TTTCCTACAA
  AGTTGAGACA GCCTCTAGTG GGCTTTCAGG TGGCTGTCCT TACCTAGATG GGATACTCTT
  CTGGAGGTTC CATCTGCGAT GGGCCACTTC CATCTGCACC CATGGGGCAG GCTGAGCACA
  AGCATTTGGA GGAGGGGCTA CCTCTGGATT CCTGTACTGG ATTCCTACCA TTGCTCATGG
  S
  CACACACAGG AGTGTCTGCC TTTCTCCCTA GGAAAAGCGT CGGGCAGAGC GGGCCGAGCA
  GCAGCGTATT CGCAATGAGC GGGAGAAGGA AAGGCAGAAC CGCCTGGCTG TGAGTGACCC
  TAGCCCGGCC ACTGAGCCCT CGGTCCCATA TCTCTTCACA GACATTGGTT CAAGTGGCAG
  CATTTATCAC ATCACATAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145548299	ENSMUSSNP2208973	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47791915					SNP	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776517 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	917 bp distal
Rr12645	regulatory region 12645	1884 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1039 bp downstream
Tssr226	transcription start site region 226	769 bp upstream
Tssr227	transcription start site region 227	661 bp downstream
Tssr9015	transcription start site region 9015	1043 bp downstream
Tssr9016	transcription start site region 9016	791 bp downstream
Tssr9017	transcription start site region 9017	753 bp downstream
Tssr9018	transcription start site region 9018	735 bp downstream
Tssr9019	transcription start site region 9019	702 bp downstream
Tssr9020	transcription start site region 9020	26 bp upstream
Tssr9021	transcription start site region 9021	78 bp upstream
Tssr9022	transcription start site region 9022	564 bp upstream
Tssr9023	transcription start site region 9023	583 bp upstream
Tssr9024	transcription start site region 9024	677 bp upstream
Tssr9025	transcription start site region 9025	966 bp upstream
Tssr9026	transcription start site region 9026	1168 bp upstream
Tssr9027	transcription start site region 9027	1278 bp upstream
Tssr9028	transcription start site region 9028	1318 bp upstream
Tssr9029	transcription start site region 9029	1898 bp upstream
Tssr9030	transcription start site region 9030	1933 bp upstream
Tssr9031	transcription start site region 9031	1992 bp upstream
Tssr13890	transcription start site region 13890	1004 bp upstream
Tssr13891	transcription start site region 13891	759 bp upstream
Tssr13892	transcription start site region 13892	692 bp upstream
Tssr13893	transcription start site region 13893	675 bp upstream
Tssr13894	transcription start site region 13894	69 bp downstream
Tssr13895	transcription start site region 13895	79 bp downstream
Tssr13896	transcription start site region 13896	599 bp downstream
Tssr13897	transcription start site region 13897	670 bp downstream
Tssr13898	transcription start site region 13898	1958 bp downstream