rs47792060 SNP Detail

Summary

• ID
  rs47792060
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156265020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGGAAGC TGGGATTCTT
  ATCTCTCTCC CTGAATACAC ACCTCAAGAG AGCCGCTGCC CTGGCAGCTC ACTGGCGCTG
  AAATCTGGTG GTGGTGGGTG TCTCCTTTTG TGTTTATTTT TATTAAGCTG CTTTTCTCGT
  CAAGACCCTG ACCTTCCCAT GCCTCAGTTT CTCTGTTTAG GCGGCTAGGA AGCTCAGTGT
  Y
  GTGTCTTTGA GGCAGGTTGG ACTTTGGCTC AAAGCTCTAG ACCTGTCTTA TTACCAAGAT
  TTAGGAATTC ACTGTTCTTT AAAAAATGTT ATATTTGATA TGCATGTGAC CATCAGAGAA
  TAACTTGTAA GAGTCAGGGA TTGAACTCAG GACATCGGGC TTGGTAGGAA ATGGCTTTAC
  CCAATGAGAC ATCTTGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148072186	ENSMUSSNP20470	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320579312	CHEV_2_156248836	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47792060					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156265020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	1118 bp distal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	within coordinates
Rr55936	regulatory region 55936	within coordinates
Tssr21161	transcription start site region 21161	1986 bp downstream
Tssr21162	transcription start site region 21162	1977 bp downstream
Tssr21163	transcription start site region 21163	1957 bp downstream
Tssr21164	transcription start site region 21164	1926 bp downstream