rs47793080 SNP Detail

Summary

• ID
  rs47793080
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:78318855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTAATGA ATGAGGTTGT
  CTCTGATCAT TTCTGGCAGG TGGTGCTTCC TGCTTGTGAC TGGTTGCCTT GGAGGGAACC
  AGGGTGTCAT GGGCACTAGA ATGGGAGCCA TAGGCAATGT CAGCTGACTG GTGCTTCCTT
  GCCTGGCTGG TCCAGCAGGA AGATTGGGCT GGCCTGGGCA GCCAGGTGGT GGCCTCTTGC
  M
  ATGTACTTTT TGGCTGGTCA CTGAGCAAGG TGGCAGGTCC CCATTCCCCT TCCACTCATG
  GCCAGCCACT ATACTGATTC CTGGGAGATG TTAGGGTATA GTAGCTGGCT ACCATGGACC
  TGGAAGGATC TGGAAGGACC ACAAGTGGCT GGAATTGCAT CTAAGGACAA TCCAGGGCTG
  TCCTGAATCA GGCTTGCTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52381083	NES15269813	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47793080					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52381083	NES15269813	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:78318855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1783	CpG island 1783	535 bp distal
Gm9978	predicted gene 9978	1549 bp downstream
Rr225087	regulatory region 225087	54 bp distal