rs47793199 SNP Detail

Summary

• ID
  rs47793199
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:118686952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACATCACT TGCTTTCCTG
  CACTTTATGC AATTCACAGC TAACATTCTA ACGATTATCC GTCAATCACC CACCTTCGAG
  ACTAAAATGC AATCCCCAGA GACCCCTTTG CTGTGTGCCA GCGTGTGCCC AGGAGGCCAG
  ATAGGAGGAA ACAGTGGAGG AGACGGTACA GTGAAGTGAG ATCTTTCTGG GGAGAGGGAA
  R
  TGCCAGTGTC TGCTTCAGGG CAGTATCATC TTGGCCAACT TCATGCCTTC CAGCCACACA
  GAGACTGTGA AATGCCTGGG ACACAGTGTA GCTGAGGAAA CCCTGCCATG ATGATACACA
  CCTTTCCAAA GAGCTATGCT TCCCTCCCTC ACTCTGCCTA GGTCCAAAAT TACACTGTAG
  CCCCTCACAC ATTGGATGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61322065	NES16929607	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss323503873	CHEV_10_118288103	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47793199					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61322065	NES16929607	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:118686952 () rs orientation: forward

Symbol	Name	Function Class
Gm40776	predicted gene, 40776	1915 bp downstream
Gm67702	predicted gene, 67702	1834 bp downstream
Rr226050	regulatory region 226050	1649 bp proximal