rs47794559 SNP Detail

Summary

• ID
  rs47794559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:16193031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACCCAC CGAAGAAGCA
  AAGAGCAACT CGTAGGGTAT TGAATTAGTG ATTAATTTTG GAACACTGAA ACTTTTGCTG
  TTAGAACAAA AACAAAATAA AAACAGAAGC AACGAGCGAC ATCAACAAAA AGCCAGCGAA
  CCTTACCCCC AACTCAATTT TATTTTTTGT AAAGTGACTA ACTACTTTTT GCCAAGGAAT
  R
  CAATCTTGAC AATGGGCTCT CAGACCCTAT GCTGAACGAC TCAATCCTTA AGAGGAAAAA
  CTTTCATGGA TTCTAATCAT TGGCTCAGGA CCACACTAAC CTGTTGCTGT GGAGAAAAAT
  ACCTGTCCAA AGCCCAGGCT CGAAACTGAG AACTCCTCTC CAGTCATGAG GATACAGATC
  TTACTGCCAA TCTGTGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52620144	NES15517397	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47794559					SNP	A	A	G	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52620144	NES15517397	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:16193031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5296	CpG island 5296	649 bp distal
Inhba	inhibin beta-A	within coordinates
Tssr118436	transcription start site region 118436	1740 bp downstream
Tssr118437	transcription start site region 118437	1504 bp downstream
Tssr118438	transcription start site region 118438	1390 bp downstream
Tssr118439	transcription start site region 118439	1342 bp downstream
Tssr118440	transcription start site region 118440	1148 bp downstream
Tssr118441	transcription start site region 118441	1033 bp downstream
Tssr118442	transcription start site region 118442	813 bp downstream
Tssr118443	transcription start site region 118443	329 bp downstream
Tssr118444	transcription start site region 118444	268 bp downstream
Tssr118445	transcription start site region 118445	1473 bp upstream