rs47794668 SNP Detail

Summary

• ID
  rs47794668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31427371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAG TGGCATTTCA AGGTATCTGA
  Y
  TCTGACATGA GGCTCTAAGG CTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss60561813	NES16488880	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C		T		T
ss325358920	CHEV_17_31345342	CHEVERUD	SCREENING_POP	f	SNP						T		C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs47794668					SNP	C	C	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60561813	NES16488880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31427371 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	within coordinates
Rr370214	regulatory region 370214	300 bp downstream
Tssr143654	transcription start site region 143654	285 bp downstream
Tssr147277	transcription start site region 147277	400 bp downstream
Tssr147278	transcription start site region 147278	416 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	within coordinates