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rs47795874 SNP Detail
Summary
  • ID
    rs47795874
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr13:19487646 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGTTACCTGC ATAAGGCTGT
    AATACTTGTT TGTGTTGACA AAAAAGTCAT GGAGCAAAGA GATTGCATAA CCTCCTTTTT
    GCATCAGAAA TTACCCAGAT TTCCAGAATA TTCTCTAAGT GATTCAGTCT ATGGATGAAC
    TTGAATCTCG GGATGCTACT CACATCTACC CAGCATCACT ATGAAGGATT CTACAATGCC
    Y
    GAGGCTCACA GCCTACTTTG TTATTGCTCT CTATGGAAGA ACAGTTTTAA ACCAAATCAA
    ATGTTCAATG GGAAGCACTG TGGCTGTTCT AGTTACAGCA AGTGGAACAA TTACAGTTAT
    TCTAAAGTAG AAGTGGAAGG ATGGGGGAGT AAGAATGACA AGCCAGTGGC ATAGAGTAAT
    CCTGGGGAAT AAACAGATGA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss52626802 NES15515684 PERLEGEN MM_PANEL2 f SNP C C T C T C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs47795874 SNP C C T C T C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52626802 NES15515684 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:19487646 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Tcrg T cell receptor gamma chain within coordinates
Trgc2 T cell receptor gamma, constant 2 1584 bp downstream
Tssr118532 transcription start site region 118532 1647 bp upstream
Tssr121559 transcription start site region 121559 902 bp downstream
Tssr121560 transcription start site region 121560 961 bp downstream
Tssr121561 transcription start site region 121561 1512 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory