rs47796093 SNP Detail

Summary

• ID
  rs47796093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGCAGAT GCTTTTTCAA TTCATGCAGC TCAAAGAGAG
  GCCAACTTAC AAGTGCTTTC AACAGCACCA GACCCAACAC ACAGAGATAG ACACCACCAG
  R
  AGAAATAATT CTTGCCATAG ACCTTACTTC CACCTGATTG TCCCTGTCTT CACAGCTCTA
  GCCTAGAGGC TACCATCAAT GAAAAACACC TGTGTGAGAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	PWD/PhJ	WSB/EiJ
ss52288620	NES15304576	PERLEGEN	MM_PANEL2	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	PWD/PhJ	WSB/EiJ
rs47796093					SNP	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288620	NES15304576	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370566 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93270	transcription start site region 93270	1729 bp downstream
Tssr93271	transcription start site region 93271	1611 bp downstream
Tssr93272	transcription start site region 93272	1556 bp downstream
Tssr93273	transcription start site region 93273	1285 bp downstream
Tssr93274	transcription start site region 93274	752 bp downstream
Tssr93275	transcription start site region 93275	619 bp downstream
Tssr93276	transcription start site region 93276	565 bp downstream
Tssr93277	transcription start site region 93277	517 bp downstream
Tssr93278	transcription start site region 93278	481 bp downstream
Tssr93279	transcription start site region 93279	325 bp downstream
Tssr93280	transcription start site region 93280	111 bp upstream
Tssr93281	transcription start site region 93281	151 bp upstream
Tssr93282	transcription start site region 93282	175 bp upstream
Tssr93283	transcription start site region 93283	252 bp upstream
Tssr93284	transcription start site region 93284	586 bp upstream
Tssr93285	transcription start site region 93285	811 bp upstream
Tssr93286	transcription start site region 93286	925 bp upstream
Tssr93287	transcription start site region 93287	1287 bp upstream
Tssr93288	transcription start site region 93288	1547 bp upstream
Tssr93289	transcription start site region 93289	1615 bp upstream
Tssr97556	transcription start site region 97556	within coordinates
Tssr97557	transcription start site region 97557	364 bp downstream
Tssr97558	transcription start site region 97558	1551 bp downstream