rs47796425 SNP Detail

Summary

• ID
  rs47796425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100910953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAACAAA AACAAAAACA
  AAAGATGCTT GAGCCCCAGG CTCAATCATT ACTACTGCCA AAAACCATCC CTATCACTGA
  CAAATTATTA CAGATTACGG TAGAACTAAG AGTACTGATA AGCTCAAAAA ATAGTTTGTT
  CTTCAGCTGT CGTGTTTACA ACAGACATAT CTGTATATGA CTAGGTATGG TCCTTAATGA
  Y
  TATAATTCTA GCACCTGAAG GCAAAAACAA AAGATTACTA CAAGTTCAAG GTTATAGCCT
  GCCAGTGTTT GCCTTTCCTT TTGTTTCGTT TCGTTTTGTT TTGTTTTTTT GAGGCAGGGT
  TTCTCTGTGT TGACCTGGTT GTCCTGGAAC TCACTCTGTA GACCAGGCTG GCCTCGAACT
  CAGAAATCCG AGCCTCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52685770	NES15536541	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47796425					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52685770	NES15536541	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100910953 () rs orientation: forward

Symbol	Name	Function Class
Cenph	centromere protein H	within coordinates
Cpgi6041	CpG island 6041	860 bp proximal
Tssr123809	transcription start site region 123809	1358 bp downstream
Tssr123810	transcription start site region 123810	1399 bp downstream