rs47796979 SNP Detail

Summary

• ID
  rs47796979
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101046657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTTGTT TAGTGAAAAT
  GTTTTACTAT GTAATCCCTG AATTTGAGAT TCTCCTAACT TGTGTTCTCA GTGGTGGAAT
  TAGGAGTAAG GTACCACACC CAGGTTAAAT CCATTCTTCA AAATTACCTT TCCACATAAC
  ACAAATATAA AGGGGTAGTT CAGTAATTAT GTTTAACTCT TTTCCCTCCT GGGGCGGGGG
  T
  GGGGGGGTGC GGGGAGAGGA ATTACCTGTT CTAATAAATT AGAATTTCAA AATTCCAAAT
  GGAAGAAAGG GGCTTAGAGG CTATTTCCTA AGTGATAAAA TATAAAAGGG TATAAAACAC
  CAGACTTTTG TTGTATAGCC CTGGGTGTCC TGGAACTTTG TAGACAGGCT GGCTTCAAAC
  TCAGAAATCC GCCTGCCTCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137998130	ENSMUSSNP1250994	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs47796979					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101046657 () rs orientation: forward

Symbol	Name	Function Class
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	within coordinates
Rr254052	regulatory region 254052	257 bp distal
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	1814 bp upstream