rs47797498 SNP Detail

Summary

• ID
  rs47797498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185046539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATACTCA TCCTACCGCA
  CTCACTTCAA GGCAATGCCC TCAAAGTCTT GCATTCTGAT AGCTGAGGAC TAAGAAACAA
  CTGGCTTTAA GTTTACTTGT GTGAATTTAT CTCAACTATA ATCATTTCAT TTTCAACAGA
  TGTATTAAGA TAGTAGTGAA ATATAACTGA AAAAACTCTT GAGTTCTGTA AGAGCCACAC
  R
  GGGACAATCC TGGAGCAGAG TCAACTCTAA ACTATAACAA TACTCAAATG GTCTTACAAA
  TCTAGCCTGT ACATGCTTAG CCTGAAAAAG ACTTCTTAAA ATCCCTAGTG TGGTGCTCAA
  GACTCCTTCA GCCTGTCCCA GCCAGTTATT TTTTTTAATT TATTTATTAT TATATATATT
  TAAGTACACT GTAGCTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146427419	ENSMUSSNP6987797	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320174695	CHEV_1_187138221	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47797498					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185046539 () rs orientation: forward

Symbol	Name	Function Class
2010103J01Rik	RIKEN cDNA 2010103J01 gene	543 bp downstream
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	within coordinates
Mir194-1	microRNA 194-1	957 bp downstream
Mir215	microRNA 215	650 bp downstream
Mirc38	microRNA cluster 38, including Mir194-1 through Mir215	650 bp distal
Tssr10601	transcription start site region 10601	668 bp downstream