rs47797798 SNP Detail

Summary

• ID
  rs47797798
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64082976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGACGCAT GTTTGCACCA ACCAAAACCT GGCGTCGTTG
  GCACCGCAGA GTGAATACAA CCCAAAAACG ATATGCCATC TGTTCTGCCC TGGCTGCCTC
  K
  GCCTTACCAG CTTTGGTGAT GTCTAAAGGT CTGATGCTTT GATATGTGAC ATTTAGTTTT
  AACTTGTACC TAAGTAAATT GCTTTCATGA ATTCTGTTTC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61410344	NES16794884	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47797798					SNP	G	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61410344	NES16794884	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64082976 () rs orientation: forward

Symbol	Name	Function Class
Gm22455	predicted gene, 22455	1429 bp upstream
Gm22571	predicted gene, 22571	179 bp upstream
Gm23136	predicted gene, 23136	967 bp upstream
Gm23344	predicted gene, 23344	579 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Rr368800	regulatory region 368800	1501 bp downstream
Rr681195	regulatory region 681195	1531 bp distal
Snord16a	small nucleolar RNA, C/D box 16A	172 bp downstream
Tssr85597	transcription start site region 85597	722 bp downstream
Tssr85598	transcription start site region 85598	268 bp downstream
Tssr85599	transcription start site region 85599	81 bp downstream
Tssr85600	transcription start site region 85600	1275 bp upstream
Tssr85601	transcription start site region 85601	1680 bp upstream
Tssr85602	transcription start site region 85602	1747 bp upstream