rs47798188 SNP Detail

Summary

• ID
  rs47798188
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81013315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTTATGTG ACTTGAGCCT CAAGATAGGG TCTTCTAGCA
  CAGGCTTGCT CTTAAGTGTC GCAGTTGTCG GTTTCGGCGT TTGTTTAGAG CTGTGGACAC
  M
  TCTGTGAACT TTTGATGCTT ATTTCAGAGG TCCTGGGTTG TACGTTTGAG TCACACTGTG
  AGCTCAGCTC CAATCTTGGG CCGACATCTG GTTCCTGCCC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388505	NES15267087	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47798188					SNP	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388505	NES15267087	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81013315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	within coordinates
Eef2	eukaryotic translation elongation factor 2	within coordinates
Gm67815	predicted gene, 67815	412 bp upstream
Rr402079	regulatory region 402079	801 bp downstream
Rr435542	regulatory region 435542	840 bp distal
Rr435543	regulatory region 435543	423 bp distal
Rr435544	regulatory region 435544	within coordinates
Snord37	small nucleolar RNA, C/D box 37	1480 bp upstream
Tssr94695	transcription start site region 94695	833 bp downstream
Tssr94696	transcription start site region 94696	212 bp upstream
Tssr94697	transcription start site region 94697	328 bp upstream
Tssr94698	transcription start site region 94698	568 bp upstream
Tssr94699	transcription start site region 94699	1669 bp upstream
Tssr94700	transcription start site region 94700	1853 bp upstream
Tssr94701	transcription start site region 94701	1913 bp upstream
Tssr98570	transcription start site region 98570	1897 bp downstream