rs47800154 SNP Detail

Summary

• ID
  rs47800154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29895313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCGTGA TGACACACAC
  CTGTAAAACC AGCACTGGGA GGTGAGGGCA GGCAGCCATT CTCAGTACAT AACAAGTTTG
  TGACCGGCTT GGGCTACATG AGACCCTAGA GGACACTAGG GTAAGCCCCT ATCAGAATTA
  AGTGATAAAT ACATAGTAAA TGGCAGCTCT TCTGTTAGTC CCTATGTCGC CATGTTGTTC
  Y
  CTCAGCTGGG AGCTCACCTG GTTCCCTTAG CTCGTTTACT CTTGCTCATC CTTAAACAAC
  ATCGACAAAT ACCTGCCGGT CCCTAAATAC TCTCCACTCA CTAGGTTGTG TGTCCTCGAA
  GCAGGCCTGT GGGATAGGTC TGTTATTGTC CCCATTCTAT GTATAAGTAA ACTGAGGTTA
  AACAACCAGT CTGCTTTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148668757	ENSMUSSNP3192883	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47800154					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29895313 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1847 bp distal
Cpgi18783	CpG island 18783	572 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	749 bp upstream
Rr400232	regulatory region 400232	1983 bp downstream
Rr400233	regulatory region 400233	552 bp downstream
Tssr65662	transcription start site region 65662	1931 bp downstream
Tssr71703	transcription start site region 71703	1855 bp upstream
Tssr71704	transcription start site region 71704	1748 bp upstream
Tssr71705	transcription start site region 71705	1726 bp upstream
Tssr71706	transcription start site region 71706	857 bp upstream
Tssr71707	transcription start site region 71707	845 bp upstream
Tssr71708	transcription start site region 71708	798 bp upstream
Tssr71709	transcription start site region 71709	663 bp upstream
Tssr71710	transcription start site region 71710	319 bp upstream