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rs47800885 SNP Detail
Summary
  • ID
    rs47800885
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr8:106861224 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACCCAGAGA ATCCTAGCAA
    ACACTAGTTG TGGCCCAGTT CATACATGTA CCTACAGGTC CTCAGACCAA ACACAGACAT
    GTCCACATTC CAAATGTATC CCAAAGAATG AGGCTAAAAA CATAGACCTG TCTACATTCA
    TACAGCCCAT ACGGCATCAT GCACATGCTT GGACATATTA GTCACCCCTC CACCTTAATT
    Y
    TGATGGGTCA CAGATACCCT GTGCCATGGT GCCCACTGTG AGGTCTCTGG CGGAGCAGGT
    GCTTGGGTGC TGCATATGGA ATTCTCTGCG GAGGTCGTAG AAGGAGAAGA AGGTGTCGGG
    GAGCACCAGG TTCTGGGAGC ACATGGGAGT GGGGGTGAAT AGGTAACCTA AGGTGTTTAC
    AACAGGGGCC TTGGGAACCC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
MSM/Ms
ss145731889 ENSMUSSNP1484928 ENSEMBL ENSEMBL_Sanger f SNP T T C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
MSM/Ms
rs47800885 SNP T T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:106861224 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1810019D21Rik RIKEN cDNA 1810019D21 gene 808 bp upstream
Cpgi20965 CpG island 20965 1150 bp proximal
Esrp2 epithelial splicing regulatory protein 2 Intron
Rr669096 regulatory region 669096 390 bp proximal
Tssr79219 transcription start site region 79219 809 bp upstream
Tssr79220 transcription start site region 79220 843 bp upstream
Tssr79221 transcription start site region 79221 872 bp upstream
Tssr79222 transcription start site region 79222 905 bp upstream
Tssr79223 transcription start site region 79223 949 bp upstream
Tssr79224 transcription start site region 79224 1277 bp upstream
Tssr79225 transcription start site region 79225 1350 bp upstream
Tssr82755 transcription start site region 82755 341 bp downstream
Tssr82756 transcription start site region 82756 353 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory