rs47801074 SNP Detail

Summary

• ID
  rs47801074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48952521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCTGTC TTGGCCACTA
  AGAGTGGCCA AGCTTCAGAT CTGGAAAATA AAGATATTTT AAGATTTGGC TTCTGACTAT
  ATGTCTATTT TAATACAAAA CATGCATTTC CAAATATCAT GTGTGCTGTG CTGCCCCCCT
  CTAGGGTATA TTCCTACCCC TGAGCTGCAG AGACCTGTGT AACTTCCACT CCAGGCCACG
  Y
  ACTGTGGCAA AGCACTAAGT GCAGAACAGA AACTGTAGGA GAACAAGCTA GTGAGGGTTG
  GGACTTAGCT GTTAGCAGAG TTAGCAATGA GCCTAGGAGT GAAGAAATGA CACTGGTGGG
  ATAGAGAAGA GTGGGCGGTA GCGGAGTTGC TACATTTCCA AAGTCAAAAG GCCTTCTGAG
  AAGGTGACCT CAGAGATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61005717	NES16117543	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47801074					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61005717	NES16117543	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48952521 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19143	CpG island 19143	1411 bp proximal
Nav2	neuron navigator 2	within coordinates
Rr161370	regulatory region 161370	1521 bp distal
Rr167850	regulatory region 167850	879 bp proximal
Tssr66792	transcription start site region 66792	1048 bp upstream
Tssr66793	transcription start site region 66793	1307 bp upstream
Tssr66794	transcription start site region 66794	1478 bp upstream
Tssr66795	transcription start site region 66795	1508 bp upstream