rs47801160 SNP Detail

Summary

• ID
  rs47801160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34484856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGAGGT CCAATAAGAT
  GAGGAAGGTT AGGCCAGTGC TCTGGGACGG GTGGGCCCAC AACTGCAGCT CATGAATCCA
  ATTCTCAACA AGGCCTCTGG GATCCTCCCA TGGCTTTGCG TGTGGTGTGT GTGTGTGTAT
  AAATTTCAAA ATGCAAGTAA AATCATGTGA TCTATGTTTT TTGTTTGTTT TGAGACAGGG
  Y
  TTGTGTAGCC CTGGCTATCT AGCTGTCCTG GAACTCACTC TGTAGACCTA GCTAGTTCTG
  AGCTCAGAGA TCGGCCTGTC CCTGCCTCAT GAGTGCTCAG ACTAAAGGCG TGCACCTCCA
  CAGCCCAGCT CTGTACATTT CTTATGGCTA CCATAAGGGA TTCTTGTGGA GCTGATAATT
  TAACAGAAAT TGGTTCATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148888925	ENSMUSSNP3004309	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47801160					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34484856 () rs orientation: forward

Symbol	Name	Function Class
D1Ertd448e	DNA segment, Chr 1, ERATO Doi 448, expressed	18 bp upstream
Gm28306	predicted gene 28306	1045 bp upstream
Imp4	IMP4, U3 small nucleolar ribonucleoprotein	within coordinates
Tssr6216	transcription start site region 6216	1889 bp downstream
Tssr6217	transcription start site region 6217	871 bp downstream
Tssr6218	transcription start site region 6218	1256 bp upstream