rs47801277 SNP Detail

Summary

• ID
  rs47801277
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:100141535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCA TGGAGTCAGA TGTGCTAAGG
  W
  CTGGGGTCCT ATTAAGGTCT GGGGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145533104	ENSMUSSNP5064309	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47801277					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:100141535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19484	CpG island 19484	390 bp proximal
Gm72028	predicted gene, 72028	within coordinates
Rr400469	regulatory region 400469	821 bp upstream
Rr652131	regulatory region 652131	within coordinates
Rr652132	regulatory region 652132	91 bp proximal
Rr652133	regulatory region 652133	692 bp proximal
Tssr68123	transcription start site region 68123	991 bp upstream
Tssr68124	transcription start site region 68124	1021 bp upstream
Tssr68125	transcription start site region 68125	1442 bp upstream
Tssr68126	transcription start site region 68126	1501 bp upstream
Tssr68127	transcription start site region 68127	1611 bp upstream
Tssr68128	transcription start site region 68128	1716 bp upstream
Tssr68129	transcription start site region 68129	1941 bp upstream
Ucp2	uncoupling protein 2 (mitochondrial, proton carrier)	1030 bp upstream