rs47802157 SNP Detail

Summary

• ID
  rs47802157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:95757816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCCTTC CTCGTTAAGG
  TTCATCATCC GGCTTTTAAC TTAAATATGA TCCCTTTACT TGGTGGCTTT ATTTAGAAGC
  CATTGTAAGG GTATTAATTA GCCTAATTTC AACATTACTG TGTCTCAGGA AATATCGGAA
  GTCCTAGAAT AAGAGAAGAA AAGAGATGAA GCATCCACCA AAATGCTCAT GCCTTAAGTT
  Y
  ATCACCTTGA GTGAACGCTT TTGTGATGCC CCAAATCAAT TACAATTTTA ACATACAAAC
  ATAGTTAATT TAAAAAAAAA AAACTGCAGG GCTAGAGAGA TGGCTCAACA GTCTCGAGAG
  CCCACTGTTC CTGTTGAGAA TCCAAGTAGC GACTCCATCC CCTTCTGGCT GGGCACAAGT
  CCAGATCCAA GAGCTCCAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60249367	NES15760602	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47802157					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60249367	NES15760602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:95757816 () rs orientation: forward

Symbol	Name	Function Class
D16Jhu52	DNA segment, Chr 16, Johns Hopkins University 52	540 bp distal
Rr392178	regulatory region 392178	1849 bp downstream
Rr520451	regulatory region 520451	615 bp distal
Rr520452	regulatory region 520452	108 bp proximal
Rr520453	regulatory region 520453	196 bp proximal