rs47803414 SNP Detail

Summary

• ID
  rs47803414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151857565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAACTAA CTGTCGCCTA
  ATGATGGTCC CTGCCCAGAG TAGCTCTCAA AATCACAGGA GAGAACAGAT CAACAGTCAG
  GTAAAGTTCT GACACACGGG GCGGGGCGGG GCGTGGCGGG GCGTGGCGGG GCGGGGCGGG
  GCGGGGGGGG GGAGCATGCA ATTCAGTCCC AAGGTAGAGG AAAGGCTATG GGATCCTCTG
  Y
  GTCCTCCAGC GAAGAGCGGG TCCATAGGAA ACACAGACAA AGAAGAGGAT GCACGGAGGC
  CCTGGGGAAC AGCAGCGTCA CATTTCTGGT GCGTGGTGAC GTAACGGCAT AGCTAATCTT
  TCCCTAATTC AAGCTGTCTC AGAATGCTGA GCCTAGCCAG CTCCCCTTCT GCAGGACTCC
  TCAGTCTTCA CCGGCCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136101123	ENSMUSSNP3360838	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47803414					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151857565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm16198	predicted gene 16198			1519 bp upstream
Gm64753	predicted gene, 64753			362 bp upstream
Rr587468	regulatory region 587468			1500 bp distal
Rr587469	regulatory region 587469			within coordinates
Rr587470	regulatory region 587470			398 bp proximal