rs47804538 SNP Detail

Summary

• ID
  rs47804538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:55678657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG GATTCCTGGA GTCTCTGAGC
  Y
  TGACCCTAGA CAGCTCAGCT GAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132150235	ENSMUSSNP5626862	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323676529	CHEV_11_55601333	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47804538					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:55678657 () rs orientation: forward

Symbol	Name	Function Class
D11Mit349	DNA Segment, Chr 11 Massachusetts Institute of Technology 349	1517 bp proximal
Gm50502	predicted gene, 50502	within coordinates
Rr447615	regulatory region 447615	1898 bp proximal