rs47806969 SNP Detail

Summary

• ID
  rs47806969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78957300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTGCAC CATCACCTGT
  GTGGCCCTCC TTCAGCCCAG TCAGTCAGCC ATCAGGGAGG GAAGGGATGG CTCACCCCAC
  AGTACTGCTG AGCTGTGCAT TCCACAGTGT TAAACAGATT CTCAGTTTAT AGTGGGTTTA
  TGGAGCTATA ACCCCACTGT AAGTCAGGAA GAATGTATAT TTTTTCACTC ACTATTTCAT
  Y
  TATTCATTCA TTCATTAACA GACTGTGTCA GAGATGCCAA GCATAATTTG CTGTGAGCAA
  TTCACAGACT TTGCTTTTGT CACTAATCAG TGTGGCCCCT ACAAAGGTCA CTCGGTAAAA
  GCTATTGCCC CTGTCCCCTC TCCTGCCCAG CTGGCCCCTT CCATCCTGGT GCTTCAGGAA
  ACTGTATCTC TCTAGAATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61654158	NES17605637	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47806969					SNP	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654158	NES17605637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78957300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4797	CpG island 4797	1427 bp proximal
Gm46359	predicted gene, 46359	449 bp upstream
Gm56547	predicted gene, 56547	400 bp upstream
Rr387474	regulatory region 387474	within coordinates
Tssr114072	transcription start site region 114072	1404 bp upstream