rs47807049 SNP Detail

Summary

• ID
  rs47807049
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACGCACAAA AAGAACAAAA GCAGATCCAC TGGAGAAACC
  TCATTATGCT CCTACATCTG TGAAAAATAG ACAAGACACA AAAGCCCCAC CAACTCTACA
  C
  TTGAAAATAT GACTTTAACA CATCCCCTTG CATGAAGGGT GAACAAACAG CTTCTTGGCT
  TTTAATACGT TCTATTACCT TCTAGTGCAC TTTCTTACT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134809933	ENSMUSSNP5009471	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320711435	CHEV_3_37537642	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47807049					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692869 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	961 bp proximal
Gm42922	predicted gene 42922	1385 bp downstream
Rr575523	regulatory region 575523	737 bp proximal
Rr575524	regulatory region 575524	1371 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1227 bp upstream
Tssr28908	transcription start site region 28908	944 bp upstream
Tssr28909	transcription start site region 28909	1185 bp upstream
Tssr28910	transcription start site region 28910	1208 bp upstream
Tssr28911	transcription start site region 28911	1225 bp upstream
Tssr28912	transcription start site region 28912	1265 bp upstream