rs47807369 SNP Detail

Summary

• ID
  rs47807369
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:110426439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTAA GCTGTCCTTA TATTGAAATC
  W
  CTTACTGCGA GCGTAGCGCA TCCGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132792057	ENSMUSSNP4150389	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323847528	CHEV_11_110396927	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47807369					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:110426439 () rs orientation: forward

Symbol	Name	Function Class
Gm11682	predicted gene 11682	317 bp upstream
Gm74395	predicted gene, 74395	within coordinates
Rr459043	regulatory region 459043	1959 bp proximal
Tssr105717	transcription start site region 105717	290 bp upstream