rs47807508 SNP Detail

Summary

• ID
  rs47807508
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83717300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGCGGTG GCTCTGAGCT
  TTAGTTACTG CGTTGTGGAG AATGGCAGAC AGAGTGACAG AAAGCCTGCA GACTGTGGGC
  TATTAACCAA CACATTCATG CAGATAACCG GAGCGCCTGG GCTCCAGTAC TGTGACAAGT
  ACCTCGATGC TTGCATTAGA AGGATAAAAG CACAAATCAG GGCTTTGTCT GGGACAAACT
  G
  CTGAAAGTCG CTTATCTGTA GAAGGATGCA GAATGCGCGC AATGTCAATA TTTACTCTGG
  CAGGGTAGGC GACCAAAGGG ACAACTTATT GTCATTACCA AACGGATTCC TTACGTTCCG
  TAGGTGAAAG AAAGACATTC AGTGAAATGA AGTTTTCAAA GGCGTCAGCT GGACGTGGTG
  GTGTATCTAT GTACAGCTAG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136709551	ENSMUSSNP1929756	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss323046430	CHEV_9_83728854	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47807508					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83717300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	202 bp distal
Gm57060	predicted gene, 57060	649 bp upstream
Rr383689	regulatory region 383689	within coordinates
Rr683950	regulatory region 683950	660 bp distal
Rr683951	regulatory region 683951	519 bp distal
Rr683952	regulatory region 683952	within coordinates
Tssr86358	transcription start site region 86358	579 bp downstream
Tssr86359	transcription start site region 86359	511 bp downstream
Tssr90761	transcription start site region 90761	681 bp upstream
Ttk	Ttk protein kinase	within coordinates