rs47808987 SNP Detail

Summary

• ID
  rs47808987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:25594893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTCTAA CGCAGCTGTT
  TTGTTCTGCA CTTTCTATTT TCGAAGCTAA TGGCTGGTGA CCTAGAGAGG CCAATGACAT
  GGAGTGGTAA GCCAGTGTTC CCTCCAGGGA ACCGTGTTAG TCTCTGCCCT CAGAGGTTCC
  TGTTATCAAG CTATTGAGCT GCAGCTGGGG CCACTTGATG AGGCCAAAGT CAATTCGCTC
  R
  GTCCACTTCA CAACAGTGAG TTTTGCCCAG AGATAAACTG CTTTGGGGCC AAGTAGTATA
  CCTCCAGGAG TCTCCAGGAG TCGGTGGCCA TTTTTCTAGG CCATTTTACT TGGTTTTGTT
  TGGTTGGGTT TTTTTTTTTG GGGGGGGGGG GGCTGGATTT CAAGACAGGG TTTCTCTGTA
  TAGCCCTGGC TGTCCTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60584294	NES16331502	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47808987					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60584294	NES16331502	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:25594893 () rs orientation: forward

Symbol	Name	Function Class
5830408C22Rik	RIKEN cDNA 5830408C22 gene	within coordinates
Cpgi20179	CpG island 20179	1705 bp distal
Gm45745	predicted gene 45745	76 bp upstream
Gm63713	predicted gene, 63713	76 bp upstream
Rr368503	regulatory region 368503	1558 bp downstream
Tssr76671	transcription start site region 76671	1388 bp downstream
Tssr80684	transcription start site region 80684	1847 bp upstream
Tssr80685	transcription start site region 80685	188 bp upstream
Tssr80686	transcription start site region 80686	168 bp upstream
Tssr80687	transcription start site region 80687	71 bp upstream