rs47808990 SNP Detail

Summary

• ID
  rs47808990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16404469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGTTCCC TGTTTGACTA
  GATGTGCTTT GCCTGGGTGT GCTCCAGTGT TAAGGAGGGA CATAGAGGTG ACAGCAACCG
  TCTAGGTCAT TCAGAAGACA AGCAAAGTCT GGCACAGTAA GAGTGCCCAA GTCGGGTTGA
  AGAGATGGCT CAGTGGTTAA GAGCATTGGC TGCTCTACCA GAGGACCCTG GCTCCATTTC
  Y
  AGCACTCATA AGGCAGTTTA CAACTGTCTT TAACCTAGAT CTAGGGGATC CAACACCCTC
  ACACAGACAT ACATGCAGGC AAAACACCAA TGCACATAAA GTTAAAAAAA AAAGAAAGAG
  TGCCCAAGTC TGCAATAGAG GCAGGAGGAC TGGCCTTAGG AAGATGGTTT TTGGTAAAGA
  GTTCTTATTT TCTTTTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148392589	ENSMUSSNP3116312	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47808990					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16404469 () rs orientation: forward

Symbol	Name	Function Class
Ceacam15	CEA cell adhesion molecule 15	787 bp downstream
Rr642728	regulatory region 642728	1558 bp distal