rs47809062 SNP Detail

Summary

• ID
  rs47809062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164118373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAGGAGAG AGGAATCTGT TTCCTGCATG TGTGAGGTCA
  TTTAAAGAAG ATCTTAACTA TAAAACTTCC ACCATGATTA GAAATTAGCC TTTGATAGCA
  Y
  TGGAAATGTA ATTGAGGAAA ATATGTAATA AAAAATATTA AAAAAAAAAG AAATTAGCCT
  TTGACAGATA AGTCTATAAG AATGAATAAG GTTATAGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148221318	ENSMUSSNP6575763	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47809062					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164118373 () rs orientation: forward

Symbol	Name	Function Class
D2Mit29	DNA segment, Chr 2, Massachusetts Institute of Technology 29	659 bp proximal
Svs4	seminal vesicle secretory protein 4	within coordinates
Tssr21549	transcription start site region 21549	495 bp downstream
Tssr21550	transcription start site region 21550	383 bp downstream
Tssr21551	transcription start site region 21551	649 bp upstream
Tssr21552	transcription start site region 21552	693 bp upstream
Tssr27409	transcription start site region 27409	457 bp upstream
Tssr27410	transcription start site region 27410	427 bp upstream
Tssr27411	transcription start site region 27411	402 bp upstream
Tssr27412	transcription start site region 27412	375 bp upstream
Tssr27413	transcription start site region 27413	360 bp upstream
Tssr27414	transcription start site region 27414	348 bp upstream
Tssr27415	transcription start site region 27415	329 bp upstream
Tssr27416	transcription start site region 27416	624 bp downstream
Tssr27417	transcription start site region 27417	633 bp downstream
Tssr27418	transcription start site region 27418	704 bp downstream
Tssr27419	transcription start site region 27419	714 bp downstream
Tssr27420	transcription start site region 27420	734 bp downstream
Tssr27421	transcription start site region 27421	758 bp downstream
Tssr27422	transcription start site region 27422	776 bp downstream
Tssr27423	transcription start site region 27423	814 bp downstream
Tssr27424	transcription start site region 27424	844 bp downstream
Tssr27425	transcription start site region 27425	865 bp downstream
Tssr27426	transcription start site region 27426	1123 bp downstream
Tssr27427	transcription start site region 27427	1801 bp downstream
Tssr27428	transcription start site region 27428	1847 bp downstream
Tssr27429	transcription start site region 27429	1873 bp downstream
Tssr27430	transcription start site region 27430	1969 bp downstream