rs47810943 SNP Detail

Summary

• ID
  rs47810943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100658362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCAGGTA ACTGTGCAGA
  AAAACTCAGG GTTGTCTTTG AGACAGGTCT CCCCAGGTTG CTCAGCTGGC CTTTCTCTCC
  TGAAGTCAAG CTTTCTTCCC TCATCGACTT CCACACCGAC CCAGCCTCCA GCTGTGGCTT
  CCATTCTCTT CACAAACACT GAGAAGCCAC TCCATCGCAC AGACACTGGT ACACAGAGCG
  R
  GAGCACATCC TTGGACCGAC AGGATGACTG CACATAGACT TGTCATATCC ATATTGCTTA
  GTCACTTGTG CATGACACAT GAACACCAAA CAGGGCTTAG ACTATCTCAT GCCTCATAAA
  AATTGCCCTT TGCCTCCATC AAAACTCTTA CAAAAATCAA GATATCAGAG ACACTGCTTG
  GGTTTCTGCT AACTCAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61948291	NES17113775	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47810943					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61948291	NES17113775	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100658362 () rs orientation: forward

Symbol	Name	Function Class
Gm57598	predicted gene, 57598	485 bp upstream
Ocln	occludin	within coordinates
Rr484926	regulatory region 484926	within coordinates